PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0620.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 268aa    MW: 29248 Da    PI: 8.2277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17137187255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++Ae rdp +ng  +r++lg++ ta+eAa a+++a+ +++g
  SapurV1A.0094s0620.1.p 137 HYRGVRQRP-WGKFAAETRDPAKNG--ARVWLGTYETAKEAALAYDRAAYRMRG 187
                             7********.**********99987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-30136196IPR001471AP2/ERF domain
PROSITE profilePS5103223.261137195IPR001471AP2/ERF domain
CDDcd000181.82E-29137196No hitNo description
SMARTSM003802.8E-34137201IPR001471AP2/ERF domain
PfamPF008471.2E-13137187IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-22137197IPR016177DNA-binding domain
PRINTSPR003671.8E-13138149IPR001471AP2/ERF domain
PRINTSPR003671.8E-13177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNEISSLCEF SALYHHHQHR SPSFNSLISC LNETWGDLPL KVDDSEDMVI YNFLRDAVSS  60
GWSPVDLSSS TATSSSSSSS SSTTTTTTTT TTIIANVVKA EPKDEPDLEA DPIKLVQESS  120
LNMEAVVTKK VVTKGRHYRG VRQRPWGKFA AETRDPAKNG ARVWLGTYET AKEAALAYDR  180
AAYRMRGSKA LLNFPHKIGS NEPDPVRITA KRRQPDTGLT AVDTGSAKMR KMLVVEGAEL  240
ERGVGYNMFQ VGPHKGLMPV GEQLLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-37134202270ATERF1
3gcc_A3e-37134202270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2289181e-139CU228918.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297926.11e-167hypothetical protein POPTR_0001s11770g
SwissprotQ404794e-89ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLB9GK351e-167B9GK35_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11770.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-60ethylene responsive element binding factor 1